PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G13110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 299aa    MW: 32024.4 Da    PI: 9.0316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G13110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.9e-10117158550
              AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 
                      GV+++   grW++  rd       + r +lg+f ++eeA++a++a+ 
  OGLUM08G13110.1 117 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAFE 158
                      9**998.9******888....23459*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.115114175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-11117163IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9117162IPR016177DNA-binding domain
SMARTSM003808.0E-4117164IPR001471AP2/ERF domain
PfamPF008471.9E-6117158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVAFRRIRIS YSDPDATDSD SDSDSADAGD HDISSRSSRT NAAARRKVIV ISLSRKKGRS  60
SSQSGRHYRR RRSEIPAAAA KAVEAEDWPS SSDGMRRGAV AAARSASAAA KKGSRGGVYQ  120
RQPGRWAVDF RDSQLKVRQW LGTFPSEEEA RAAYDAFEVQ VRASLSCGGA GAVAPSPARV  180
KIQLPAPRRV FGRRKKTQTT TTTTESSSQA TVSASPSSEA AALPSSSASA AMPPPLNPPP  240
FVVDPFLGED DHLAADDDRF GFGLADLGHL PLPFLDDNDM DFKLSDSDDL SSLFDIGFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15471RKKGRSSSQSGRHYRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875765.11e-134ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0AUJ60.0A0A0E0AUJ6_9ORYZ; Uncharacterized protein
STRINGOGLUM08G13110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-07related to AP2 11