PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G15970.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 249aa    MW: 27673.2 Da    PI: 5.5414
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G15970.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox215.9e-0769116346
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkv 46 
                      k   +t+eq+e+Le+++  +++p   +r++L  ++    +++ +q+kv
  OGLUM08G15970.4  69 KYVHYTPEQVEALERVYTDCPKPISVHRQQLLCECpilaNIEPKQIKV 116
                      66789****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.940.101.8E-201062IPR012293RNA polymerase subunit, RPB6/omega
SuperFamilySSF635626.02E-191863IPR006110RNA polymerase, subunit omega/K/RPB6
PfamPF011921.6E-82361IPR006110RNA polymerase, subunit omega/K/RPB6
PfamPF000461.7E-469116IPR001356Homeobox domain
CDDcd000865.39E-469116No hitNo description
Gene3DG3DSA:1.10.10.602.8E-572116IPR009057Homeodomain-like
Gene3DG3DSA:3.40.850.106.2E-15157216IPR001752Kinesin motor domain
PfamPF002257.3E-13167216IPR001752Kinesin motor domain
SuperFamilySSF525401.65E-11174218IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500679.484174249IPR001752Kinesin motor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAEDDYNDMD MGEQEKTARP WKTSKYMTKY ERASILGTRA LQISMNAPVM VELEWGTDPL  60
EVSGMDSCKY VHYTPEQVEA LERVYTDCPK PISVHRQQLL CECPILANIE PKQIKVAAHH  120
NGHGTSHENH TQESESSVEQ HDPESQDDIS IKATPADESP PEETSAAPTK EQDFVDLAGS  180
EQAAQTHAVG ARLKEGCHIN RSLLTLTTVI RELRKAKCGL FVTHGVMPIA KIDVGRSKLS  240
SHKEAPMVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044639e-80AP004463.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0456B03.
GenBankAP0149649e-80AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AVI10.0A0A0E0AVI1_9ORYZ; Uncharacterized protein
STRINGOGLUM08G15970.11e-153(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.19e-24HD-ZIP family protein