PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G16380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 266aa    MW: 27741.3 Da    PI: 5.652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G16380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.5e-35872073124
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt  +s +a ++            ++++++a+++a
  OGLUM08G16380.1  87 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAApaF---AAAPPPADQHSSAMAAA 177
                      689**********************************************************9955555333221...11111122222334444 PP

              TCP  95 akskksqksaasalnlakesrakararare 124
                      a s  ++k +as ++  + s+a+ar r ++
  OGLUM08G16380.1 178 AASAAKEKGEASSSSTTNASSARARNRGHD 207
                      455555555555566777777777777554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR015117.7E-54757IPR020467Potassium channel, voltage dependent, Kv1.4
PRINTSPR015117.7E-56069IPR020467Potassium channel, voltage dependent, Kv1.4
PfamPF036343.6E-3288199IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2588146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAVAAAAAAV  60
EGGGGGGGGG AGGSPAAAAA ATRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVARDFFALQ  120
DKLGFDKASR TVEWLLTQSK HAIDRLTLPD SADAAAAPAF AAAPPPADQH SSAMAAAAAS  180
AAKEKGEASS SSTTNASSAR ARNRGHDGSS PVAPMDERGR RGVELDWTAA AAASTEQPMD  240
GLEYYFQYYN HLEEIMSCDP TTTTDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-121transcription factor TB1
TrEMBLA0A0E0AVP30.0A0A0E0AVP3_9ORYZ; Uncharacterized protein
STRINGOGLUM08G16380.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-24TCP family protein