PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G16680.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 189aa MW: 20116.6 Da PI: 7.5534

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G16680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.8	7e-30	96	151	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAa++GghavDGC+Ef+++ geegt al+CaACgCHR+FHRr v+ OGLUM08G16680.1 96 GRVRYGECRRNHAARMGGHAVDGCREFLAE-GEEGTGGALRCAACGCHRSFHRRVVV 151 589************************8.999******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-13	98	146	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.9E-28	98	150	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.5E-23	99	148	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.749	100	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGFNFVDWWA FGYGLGGLVA LSGEQREQEY VARATRGHSD ALQRDRQITE CDESGRSGSI 60 NAMMKRMVIL RRCEPPPLPP PQPAAAVVAA MGGCCGRVRY GECRRNHAAR MGGHAVDGCR 120 EFLAEGEEGT GGALRCAACG CHRSFHRRVV VVQQCCACDT AAAAAAAGGW EWRDCSPESS 180 SSASSTTAS

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBank	CT831443	0.0	CT831443.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034C07, full insert sequence.
GenBank	CT831444	0.0	CT831444.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001I02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649658.1	9e-58	mini zinc finger protein 4
Swissprot	Q0J5F8	8e-59	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A0E0AVT2	1e-134	A0A0E0AVT2_9ORYZ; Uncharacterized protein
STRING	OGLUM08G16680.1	1e-135	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	2e-18	mini zinc finger 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]