PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G17470.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 198aa    MW: 21456.2 Da    PI: 6.9148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G17470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151258148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEde l +av+++   +W+ Ia  ++ +R +k+c++rw ++l
  OGLUM08G17470.1 12 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 58
                     579*****************************.***********9986 PP
2Myb_DNA-binding47.73.5e-1566107346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+eEd +++   + +G++ W+tIar+++ gR+++ +k+rw++
  OGLUM08G17470.1  66 AFTAEEDAIILAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 107
                      79******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.014762IPR017930Myb domain
SMARTSM007172.4E-151160IPR001005SANT/Myb domain
SuperFamilySSF466894.15E-2811105IPR009057Homeodomain-like
CDDcd001679.11E-141458No hitNo description
Gene3DG3DSA:1.10.10.604.6E-221465IPR009057Homeodomain-like
PfamPF139217.4E-151572No hitNo description
SMARTSM007171.5E-1263111IPR001005SANT/Myb domain
PROSITE profilePS5129417.44265113IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2066111IPR009057Homeodomain-like
CDDcd001675.11E-1066106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAADGGDGSG RKTPWTQEED EALRRAVREH RRQNWAEIAL ALPRRGPKSC RLRWCQHLSP  60
ELDSRAFTAE EDAIILAQQR VHGNKWATIA RCLPGRSDNA VKNRWNSALR KLLQVQHARG  120
AGSPPAAAAA AAGDDRDDAP VCLQLFPARA GGVKEAGLFA GEKDVEEEDV ATSLTLGLPV  180
LCEAELELRL GPAWPATA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-28121162106MYB3
3zqc_D4e-28121162106MYB3
3zqc_G4e-28121162106MYB3
3zqc_J4e-28121162106MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649306.11e-112transcription factor MYB77
SwissprotQ9SN128e-35MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0E0AW411e-139A0A0E0AW41_9ORYZ; Uncharacterized protein
STRINGOGLUM08G17470.11e-139(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.16e-37myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]