PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G18410.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 453aa    MW: 48519.4 Da    PI: 10.5125
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G18410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.12e-31189288298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                      ++ r+w+ +De+++L++li+++ak+g+   +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++   ++ +ksg++p++ +ehd++++els
  OGLUM08G18410.1 189 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYELS 282
                      578************************888999*************************************99899******************* PP

           DUF573  93 kkiWgs 98 
                      kk+Wg+
  OGLUM08G18410.1 283 KKVWGT 288
                      ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.3E-28191287IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEASDGE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAAAA  120
FDDGDDEGNA TPPPRSRRSS RVEATGVKPI SSRPMDASRR PAAASSQSQR RSKRPRSSPT  180
QHSPEQHKRP PRVWNPQDEV TILRALISYR AKNGALPGSS QDTGKLHNMI RGQLSVKAST  240
TQLSDKVRRL KHKYNLILTR VTKSGRDPDL PTEHDREVYE LSKKVWGTKS SGAGAGSGGG  300
GGGGRVYENA EVVQSDEEQG SRDDSDEDME SGWDDRDHRN RRLKAIVVAN GNGNAVTGGR  360
SVHGNGSGKG DVADKGKDMY PYLWEAVEEL SKEHPSGTAF RKAFGVLDGS RARAMEEKLN  420
RFRLSEIRQQ LRRMDLMKET IKMVLDALEG SDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0STOREKEEPER protein
TrEMBLA0A0E0AWF20.0A0A0E0AWF2_9ORYZ; Uncharacterized protein
STRINGOGLUM08G18410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-14DNA-binding storekeeper protein-related transcriptional regulator