PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G18590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 407aa    MW: 44202.1 Da    PI: 10.2617
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G18590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33511502103
                      HHHHHHHHHCTGGGTTTSEESSSS.......SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.......nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                      Fl+k+y++++d+++++++sw ++g       +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv  e+         weF+++ F+k
  OGLUM08G18590.1  51 FLTKTYQLVDDPATDHVVSWGDDGggggesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 135
                      9********************88879999999****************************************999.........********** PP

                      XXXXXXXXXXXXXXX CS
     HSF_DNA-bind  89 gkkellekikrkkse 103
                      g+k+ll++i+r+ks+
  OGLUM08G18590.1 136 GEKQLLCEIHRRKSA 150
                      ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3541142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5547147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3048147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-2951147IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVLNLCHHHR RCSGLLATSL TTTRTMEWEE ESEAARQKAA AASASVVPAP FLTKTYQLVD  60
DPATDHVVSW GDDGGGGGES ASSFVVWRPP EFARDILPNY FKHSNFSSFV RQLNTYGFRK  120
VVPERWEFAN EFFRKGEKQL LCEIHRRKSA AATWPPFPPP PPPFFAPRHF AAGAFFRHGD  180
GMLHGRLGAL VTTTERRHWF ESAALPVAPS SRLLSQLGPV IAPARRAAAT PEEEALMQEN  240
HRLRRGNAAL VQELAHMRKL YSDIIYFVQN HVRPVAPSPA AAAALHGLGV LRPPPAGGKA  300
PAAEVRGASG RSATSSSSLT VAEDQPTLLA LRLPRTTEKI INEVSGGNGG GSTKLFGVHL  360
SSADEQTSSG ASRKRSPPQE QPPTSPAPKR TLVVEHSELR LSIVSPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-224014719129Heat shock factor protein 1
5d5v_B5e-224014719129Heat shock factor protein 1
5d5v_D5e-224014719129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046930.0AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.10.0putative heat stress transcription factor B-4a
SwissprotQ6Z9R80.0HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLA0A0E0AWH00.0A0A0E0AWH0_9ORYZ; Uncharacterized protein
STRINGOGLUM08G18590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-72heat shock transcription factor B4