PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G20830.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 434aa MW: 46319.8 Da PI: 6.3793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G20830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	269	288	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OGLUM08G20830.1 269 FSCPVCFKTFNRYNNMQMHM 288 89*****************9 PP
2	zf-C2H2	12.5	0.00045	355	375	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ OGLUM08G20830.1 355 CRKCGKAFAVKGDWRTHEKNC 375 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.5E-6	269	288	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	269	291	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	269	296	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	271	291	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.85E-6	337	373	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	340	373	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	353	373	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	353	373	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	379	402	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAAHLP PPLPPPYAAL YPTAGGVGVG 60 AHHHHQYPPA AFFHPPLVHQ QHQAPPSPPL REALPLLSLS PTPARRGGVV DAAADSDSDD 120 DDDGDCCYHH LQDQEGAAAG STATPAAAAA RAPLFADLNC IPTCCGDDND GGDPMDVEIA 180 GTTADIDAAV ALRIGLPAGG TEADLLSGLT GAGVEHEEEE EDCKVDGGGS GGDDEVVPLG 240 FSSTPIGKLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE 300 SLRGVQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGL KPFLCRKCGK 360 AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GHAHTALDAD DDDGAVSDAD 420 AVVRPSSSLQ PPPR

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAAHLP PPLPPPYAAL YPTAGGVGVG  60
AHHHHQYPPA AFFHPPLVHQ QHQAPPSPPL REALPLLSLS PTPARRGGVV DAAADSDSDD  120
DDDGDCCYHH LQDQEGAAAG STATPAAAAA RAPLFADLNC IPTCCGDDND GGDPMDVEIA  180
GTTADIDAAV ALRIGLPAGG TEADLLSGLT GAGVEHEEEE EDCKVDGGGS GGDDEVVPLG  240
FSSTPIGKLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  300
SLRGVQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGL KPFLCRKCGK  360
AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GHAHTALDAD DDDGAVSDAD  420
AVVRPSSSLQ PPPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	0.0	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649538.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-113	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0AXB2	0.0	A0A0E0AXB2_9ORYZ; Uncharacterized protein
STRING	OGLUM08G20830.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]