PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21000.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 399aa    MW: 41576.2 Da    PI: 8.4764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13330375655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  OGLUM08G21000.2 330 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 375
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-13328379No hitNo description
Gene3DG3DSA:4.10.280.103.1E-15329386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPATATA AAAHFPDDPT MATQHHHQQQ QMMFQHHPQQ MASVEGLYRT  120
VSSTGIDAAT AAAGGGGGGL LRQSSSPAGF LNHLNMDNGY GSMLRAGMAA AAGGGGGVGF  180
RNGANAAAAA DSPGGSGGRL KGQLSFSSRQ GSLMSQISEM GSEELGGSSP EGAGGGGGGG  240
GGRGYLSGYP MSSGWEESSL MSDTNISGVK RQRDSSEPSQ NGGGGGGLAH QFSLPKTSSE  300
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMDKQTNT  360
ADMLDLAVDY IKDLQKQVKG LNDSRANCTC SAKHQQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.10.0transcription factor bHLH130
TrEMBLA0A0E0AXD90.0A0A0E0AXD9_9ORYZ; Uncharacterized protein
STRINGOGLUM08G21000.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-45bHLH family protein