PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G22840.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 315aa    MW: 35243.6 Da    PI: 10.2733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G22840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26128177251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  OGLUM08G22840.1 128 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 177
                      8***********************************************86 PP
2K-box15.66.9e-072422844385
            K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      +++L++ eL+ Le+++ ++l+ +++k +  + + + ++ kk k
  OGLUM08G22840.1 242 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 284
                      799********************99988777777777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-34119178IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.73119179IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-27121141IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-28121202IPR002100Transcription factor, MADS-box
CDDcd002654.50E-31124189No hitNo description
PfamPF003197.4E-26128175IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-27141156IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-27156177IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVQLQDLSLS SIISCIKIHS AIIRPLSEEM GAGTMAPTGD SHDAIIPSET WILNSDETSR  60
RPRSPATLPP PVPTPLHGRA AAQQQQQQLA RRGDGEMEML GFVVDRWRSW GMEGGGRRRK  120
KGKVELRRIE DRTSRQVRFS KRRSGLFKKA YELSVLCDAQ VALLVFSPAG RLYEFASSTS  180
SIDTIFGRYW DLLDTTIDLN IEARESRLRQ KERSDDPVPK INHITQCCLI VQVIISVLES  240
NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGARASNL  300
TRLLEAKHGD GLRKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-16121189369Myocyte-specific enhancer factor 2B
1tqe_Q3e-16121189369Myocyte-specific enhancer factor 2B
1tqe_R3e-16121189369Myocyte-specific enhancer factor 2B
1tqe_S3e-16121189369Myocyte-specific enhancer factor 2B
6c9l_A3e-16121189369Myocyte-specific enhancer factor 2B
6c9l_B3e-16121189369Myocyte-specific enhancer factor 2B
6c9l_C3e-16121189369Myocyte-specific enhancer factor 2B
6c9l_D3e-16121189369Myocyte-specific enhancer factor 2B
6c9l_E3e-16121189369Myocyte-specific enhancer factor 2B
6c9l_F3e-16121189369Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429801e-179AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649437.11e-117MADS-box transcription factor 51-like isoform X1
TrEMBLA0A0E0AY300.0A0A0E0AY30_9ORYZ; Uncharacterized protein
STRINGOGLUM08G22840.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-24MIKC_MADS family protein