PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23090.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 230aa    MW: 24512 Da    PI: 10.2589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.67.8e-30191551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdkev 92 
                      lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r  ++ +g+r++ +++ g Wk a g+dk+v
  OGLUM08G23090.1  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPPAA-RGRRQQVTASGGCWKpAGGRDKPV 108
                      79****************************.8899998***********43..456789*****99875.68899999999****66678***9 PP

              NAM  93 lsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                      +++   +++lvg+kk +vf          + a  +    W+mhey+l
  OGLUM08G23090.1 109 VVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWIMHEYSL 155
                      9988988999**********8854433222333333667******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-3914179IPR003441NAC domain
PROSITE profilePS5100540.15819179IPR003441NAC domain
PfamPF023659.1E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGDKYFFAVR PPAARGRRQQ VTASGGCWKP AGGRDKPVVV ARCGGSHLVG  120
VKKGMVFVPR QGRKAPAAAA AAAGGGCWIM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS  180
SSGSRSPRRP DNDVRRTMPA VAELGRSPSS SSSQSSCVTS SSDQEEVSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-291918517171NO APICAL MERISTEM PROTEIN
1ut4_B2e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_A2e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_B2e-291918517171NO APICAL MERISTEM PROTEIN
3swm_A3e-291918520174NAC domain-containing protein 19
3swm_B3e-291918520174NAC domain-containing protein 19
3swm_C3e-291918520174NAC domain-containing protein 19
3swm_D3e-291918520174NAC domain-containing protein 19
3swp_A3e-291918520174NAC domain-containing protein 19
3swp_B3e-291918520174NAC domain-containing protein 19
3swp_C3e-291918520174NAC domain-containing protein 19
3swp_D3e-291918520174NAC domain-containing protein 19
4dul_A2e-291918517171NAC domain-containing protein 19
4dul_B2e-291918517171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615430.0AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0687760.0AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047660.0AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankEU8469970.0EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-127NAC domain-containing protein 18
TrEMBLA0A0E0AY591e-165A0A0E0AY59_9ORYZ; Uncharacterized protein
STRINGOGLUM08G23090.11e-166(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-31NAC domain containing protein 83