PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G24590.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 525aa MW: 54634.9 Da PI: 8.8044

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G24590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM08G24590.1 23 FVCEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP
2	zf-C2H2	13.3	0.00026	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ OGLUM08G24590.1 99 WKCDKCNKRYAVQSDWKAHSKTC 121 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.1E-6	22	45	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.82E-8	22	45	No hit	No description
SMART	SM00355	0.0041	23	45	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.4E-5	23	45	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	23	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	64	94	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-5	87	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.82E-8	94	119	No hit	No description
SMART	SM00355	110	99	119	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MYVDPDAEVV ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR 60 RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT 120 CGTREYRCDC GTLFSRYSLC TTPSVSKYKS SSSSFCCESY SLPRDSFITH RAFCDALAQE 180 SGRIMPPMGA ALYAAAGAGM AIGGLTGMAA SHQLQPFQDH SSAITTAANA AAQFDHLMAT 240 SSAAAGSPAF RAAQPTSSSS SPFYLGGGGD DGQAHTSLLH GKPAFHGLMQ LPEQQGSNGG 300 GLLNLSYFSG GNGGHHHHHQ EGRLVFPDQF NGVAAGNGAR AGSGEHGNSG NNADSGSIFS 360 GNMMGGGGGF SSLYSSSDQT VPPPQMSATA LLQKAAQMGA TTSSGGAGSV NSLLRGLGSG 420 GALNGKPAGA AGFIMSGESS SRSTASQTAE NESQLRELMM NTLSATGGGT GAGTVFVRGG 480 FPGVDDGKLS TRDFLGVSGG APGLQLRHGG AAGMGMAGSL DQEMK

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MYVDPDAEVV ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR  60
RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT  120
CGTREYRCDC GTLFSRYSLC TTPSVSKYKS SSSSFCCESY SLPRDSFITH RAFCDALAQE  180
SGRIMPPMGA ALYAAAGAGM AIGGLTGMAA SHQLQPFQDH SSAITTAANA AAQFDHLMAT  240
SSAAAGSPAF RAAQPTSSSS SPFYLGGGGD DGQAHTSLLH GKPAFHGLMQ LPEQQGSNGG  300
GLLNLSYFSG GNGGHHHHHQ EGRLVFPDQF NGVAAGNGAR AGSGEHGNSG NNADSGSIFS  360
GNMMGGGGGF SSLYSSSDQT VPPPQMSATA LLQKAAQMGA TTSSGGAGSV NSLLRGLGSG  420
GALNGKPAGA AGFIMSGESS SRSTASQTAE NESQLRELMM NTLSATGGGT GAGTVFVRGG  480
FPGVDDGKLS TRDFLGVSGG APGLQLRHGG AAGMGMAGSL DQEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-28	95	184	3	65	Zinc finger protein JACKDAW
5b3h_F	1e-28	95	184	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072128	0.0	AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBank	AK099830	0.0	AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
GenBank	AP004044	0.0	AP004044.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1125_C01.
GenBank	AP005251	0.0	AP005251.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0011H15.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650033.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883278.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883279.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883280.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883281.1	0.0	protein indeterminate-domain 6, chloroplastic
TrEMBL	A0A0E0AYR5	0.0	A0A0E0AYR5_9ORYZ; Uncharacterized protein
STRING	OGLUM08G24590.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	5e-96	indeterminate(ID)-domain 5