PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G05050.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 221aa MW: 23535.6 Da PI: 8.8667

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G05050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.7	3.8e-22	17	152	8	125
NAM 8 hPtdeelvveyLkkkvegkklelee.........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 hPt++el++ yL++++ +++ ++ +i+++d y ++P +L + +++ +++ wyfFs+ ++++++g+r+ ra++ +g W++ OGLUM09G05050.1 17 HPTEQELISSYLHPRLLLATTKPASagaaggvpsFIHHADAYAADPAELTArhlpaRAADGTRAWYFFSPVRTTTERGTRRARAVEsgDGCWHS 110 9************88777433334667787768**********84466666666888****************87744788* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhe 125 ++v+++ g+ vg ++ + f k+r+++g+ +t W+m e OGLUM09G05050.1 111 ESAVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVE 152 **********************99999887558***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.329	10	176	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-31	17	176	IPR003441	NAC domain
Pfam	PF02365	7.6E-13	17	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MADADADACP AVFASRHPTE QELISSYLHP RLLLATTKPA SAGAAGGVPS FIHHADAYAA 60 DPAELTARHL PARAADGTRA WYFFSPVRTT TERGTRRARA VESGDGCWHS ESAVRAVVDA 120 AGRRVGHRQF FSFVKKREED GKRVRTGWLM VELGVDNDAA SASSSNELVL CKIYMTPRMP 180 PPSPPSAVTS SAATMELMPR VPPPSPPSAV TPARSTLAGT T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005839	0.0	AP005839.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611524.1	6e-95	PH domain leucine-rich repeat protein phosphatase 1
TrEMBL	A0A0E0B0Z4	1e-158	A0A0E0B0Z4_9ORYZ; Uncharacterized protein
STRING	OGLUM09G05050.1	1e-158	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17457	9	9