PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G08000.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 878aa    MW: 101060 Da    PI: 7.3968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G08000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05727749123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OGLUM09G08000.1 727 FVCEVCNKGFQREQNLQLHRRGH 749
                      89*******************88 PP
2zf-C2H211.90.00067756778123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +++
  OGLUM09G08000.1 756 WKCDNCSKRYAVQSDWKAHAKNC 778
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525409.9E-53181204IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525409.9E-53248494IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.5E-48252519IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3004.2E-8253381IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd019830.00845257272No hitNo description
PRINTSPR003641.8E-12257272No hitNo description
PRINTSPR003641.8E-12330344No hitNo description
PRINTSPR003641.8E-12431445No hitNo description
SuperFamilySSF520581.79E-16556707IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-12592707IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.8E-12659675No hitNo description
SuperFamilySSF576674.24E-8725774No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5726749IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.094727749IPR007087Zinc finger, C2H2
PfamPF121716.1E-5727749IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0041727749IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280729749IPR007087Zinc finger, C2H2
SMARTSM00355200756776IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MDLFLSATSL VSNANEWFQF LGTAFPAASE LLSRWRRRPE RRRREDEEAE RRQLQWKELD  60
TKMKQLHCCM FDLPDLIHHA EWFSFVKGDR EVANLLPELK ARVHDAYDLL EEFNHHHQLL  120
RLDPDAAAAG DDFLQSVVSG NTVREILVGF NYLRNTLGGI IDRRAHRSEP MQIGKLLRPA  180
MSPFYDRSKV RSLENEVNEV LELLGVKICS ARPHKRRIEE GETSSASKRN RRNSGTPSAS  240
TGASCRNQEI TSDNVTVLAI SGIGGVGKTT LARQVYNDER VKGYFDLRIW ISVSDDFDVK  300
RLTKELIEFA LANWMQSDNL CNLQQSLTES IVKFRFLLVL DDVWDDVYAN QDNRWQNFLE  360
PLKSAQQGSA ILLTTRSQRV ADVVNENRHF RLEGLPPTIF DEFFEACAFG TDHCRVHPEL  420
NPIGKMIIPQ LKRCPLAAET LGRFLKPMLD KEYWNQIAGK ELWELKQEKY DILPVLRLSY  480
LYLPSHLRNC FLFCSMYPKC HRFDKDILVS SWIAAGLVEF CKGGEIERDG YQYFEELLHR  540
SLLQEDTRNP TDSMYVMHEL IHDMAQLVSE HECFIVKGET DLSKIPQGVR HLSIIGSSAL  600
NEANLRTVCE YKGLRSIVCH GVESYTLTAA AKYWFEELTK IRMLGFLSCK LNSIPETIGN  660
LKLLRYLNIS ECTFDELPPS FWHLRNLQIV DAQKCRVQHI PEDFHQLDPD AEVIALSPKT  720
LLATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKKWKCDN CSKRYAVQSD WKAHAKNCGT  780
REYRCDCGTL FSRRDSFITH RALCDLYDST STDNLELSLS TVGSHLTKGC RLGIWGQCIS  840
RLGIEKRSYA HGPPSILALE CEIQRTGALN PFKSRLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-40257709184628Disease resistance RPP13-like protein 4
6j5t_F1e-40257709184628Disease resistance RPP13-like protein 4
6j5t_G1e-40257709184628Disease resistance RPP13-like protein 4
6j5t_L1e-40257709184628Disease resistance RPP13-like protein 4
6j5t_O1e-40257709184628Disease resistance RPP13-like protein 4
6j5u_A1e-40257709184628Disease resistance RPP13-like protein 4
6j5v_A1e-40257709184628Disease resistance RPP13-like protein 4
6j5w_A1e-40257709184628Disease resistance RPP13-like protein 4
6j6i_C1e-40257709184628Disease resistance RPP13-like protein 4
6j6i_F1e-40257709184628Disease resistance RPP13-like protein 4
6j6i_G1e-40257709184628Disease resistance RPP13-like protein 4
6j6i_L1e-40257709184628Disease resistance RPP13-like protein 4
6j6i_O1e-40257709184628Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643RRPERRRR
23944ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612320.10.0putative disease resistance RPP13-like protein 1
TrEMBLA0A0E0B2280.0A0A0E0B228_9ORYZ; Uncharacterized protein
STRINGOGLUM09G08000.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.27e-54C2H2-like zinc finger protein