PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G10300.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 235aa    MW: 25214.8 Da    PI: 6.5143
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G10300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-3671151383
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                       ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+ ++sss++++  +++ ssa+
  OGLUM09G10300.1  71 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADTSSSSHRAAGDTRMSSAE 151
                      689************************************************************888886663333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.92272130IPR017887Transcription factor TCP subgroup
PfamPF036343.1E-3472152IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQQQLDQQQH QYDHFFSGHG QFNSETLEAV LCRPPRGAAA DPAVPAAAAA AVLTAARNGG  60
GGHGRARKRP FRTDRHSKIR TAQGVRDRRM RLSLDVARDF FALQDRLGFD KASKTVDWLL  120
TQSKPAIDRL AADTSSSSHR AAGDTRMSSA ERGGDHHMVA VGAAGSGKGD ADKARGPRGG  180
RSAPMELGCE LGRLVPAPVL GEYYYELAEM MSNNTGGEGD DDGDYDDDGD FLDVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611514.11e-120transcription factor TB1-like
TrEMBLA0A0E0B2U41e-169A0A0E0B2U4_9ORYZ; Uncharacterized protein
STRINGOGLUM09G10300.11e-170(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.12e-28TCP family protein