PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G10310.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 37585.7 Da    PI: 5.7923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G10310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12112155354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+         +Ka+ L +++e++k+L
  OGLUM09G10310.1 112 RSHSEAERRRRQRINGHLARLRSLLPNT--------TKASLLAEVIEHVKEL 155
                      78*************************9........8************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.801109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-11112158No hitNo description
PfamPF000101.4E-9112155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-12113160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-6218265No hitNo description
SuperFamilySSF550216.41E-5218265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MWEGGSHDAA AQLLPWFVGE SAAAAVGGYG GCVDVVGQGG GGGVFGFGFE AAAAPVVTRQ  60
QRGGAAAAAE GSSRGGGGKP AVVSGLLGSL QAELGRVTAR EIMDAKALAA SRSHSEAERR  120
RRQRINGHLA RLRSLLPNTT KASLLAEVIE HVKELKRQTT AIAAAAAAGD YHGNDEDDDD  180
AVVGRRSAAT QQLLPTEADE LAVDAAVDAE GRLVVRASLC CEDRPDLIPD IARALAALRL  240
RARRAEITTL GGRVRSVLLI TADEQQQQHC DDVDDDEDGH RLLLRHGIDG AGAAADDDEC  300
AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMNYGVHEQ  360
CSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050930.0AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.11e-168transcription factor bHLH30
TrEMBLA0A0E0B2U50.0A0A0E0B2U5_9ORYZ; Uncharacterized protein
STRINGOGLUM09G10310.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-35bHLH family protein