PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G10750.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 441aa    MW: 43417.3 Da    PI: 6.4477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G10750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12271316555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OGLUM09G10750.1 271 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 316
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-11264319No hitNo description
SuperFamilySSF474596.41E-16264323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15268323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9271316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG VHDDFLDQML SSLPPSAWPD  60
LAAGKAAEDD AEGMHHHHHQ QQQQFGGPYD ESAMLASRLR QHQISGGGGG GGGGAAAVKQ  120
MVLQQLADLR QGHHMMLQGL GGRSPAGGGG GGSDGGLLLP LTLGSGGSGG DVQALLKAAA  180
ANSAGGGDAG GVYGGGFAGS LHQQQQHFQP HPQTAPTIPT QSFGGGGGGG GGGTASGGGA  240
AQPQAGAAGG GAPAPPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD  300
KASMLDEIID YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EGRGGGAANG GAPAAAAAAA  360
GSDSLTVTEQ QVAKLMEEDM GTAMQYLQGK GLCLMPISLA SAISSATMSV LTAQSAMANG  420
GGGAADGEGS QLKDAASVSK P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148GGRSPAGGG
2275280RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057840.0AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610785.11e-151transcription factor UNE12 isoform X2
TrEMBLA0A0E0B2Z80.0A0A0E0B2Z8_9ORYZ; Uncharacterized protein
STRINGOGLUM09G10750.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-42LJRHL1-like 1