PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G11590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 410aa    MW: 44194.5 Da    PI: 7.0784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G11590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12102144246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T++Ed l+  +    G++ W+tIa+ ++ gRt++++k++w++
  OGLUM09G11590.1 102 GGFTEDEDRLICSLYIAIGSR-WATIAAQLP-GRTDNDIKNYWNS 144
                      569******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.699995IPR017877Myb-like domain
SMARTSM007177.3E-51397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-201547IPR009057Homeodomain-like
SuperFamilySSF466896.42E-2181149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2082102IPR009057Homeodomain-like
PROSITE profilePS5129420.43296150IPR017930Myb domain
SMARTSM007176.7E-11100148IPR001005SANT/Myb domain
PfamPF002497.0E-11102144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21103150IPR009057Homeodomain-like
CDDcd001675.76E-8104146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAALRAYVD AHGTGGNWIA LPHKIGTCRA RRRRLEMTVL  60
MSIWLIAHRP ELVVVVYAGL NRCGKSCRLR WLNYLRPNIR HGGFTEDEDR LICSLYIAIG  120
SRWATIAAQL PGRTDNDIKN YWNSKLKRRL LGGGRRPRGA PPRLVLSGPG PAVTAATSRN  180
AMAASAIERM QLSVRLRRLE AAAPPPPQPF TFYGSNNLAA PPWQPPISPA ASGSSEMPRR  240
LHHHHPSGAA ATSSYSGLIS SWSSSRSHII HDAWLDASST PPLSTTSMGD AATTTTTTAG  300
GESSSSTPTV STATTPFIGG SIDMEDEIDM LLQQIRCFDE NGDDGDDDND QRLIVGDEAA  360
AGAENYLRAL IDEAAENGGD VGVGSWSSCS TPGVDSVFHE YAQLDYGQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20141507108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056860.0AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03.
GenBankAP0057470.0AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610955.10.0transcription factor MYB36
TrEMBLA0A0E0B3A80.0A0A0E0B3A8_9ORYZ; Uncharacterized protein
STRINGOGLUM09G11590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-63myb domain protein 36