PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G12720.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 502aa    MW: 53257.9 Da    PI: 8.6387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G12720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-066688123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  OGLUM09G12720.1 66 YVCEICNQGFQRDQNLQMHRRRH 88
                     9*********************9 PP
2zf-C2H211.60.00085145166223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C  C+k +  +s++k H++t+
  OGLUM09G12720.1 145 ACARCSKAYAVHSDYKAHLKTC 166
                      6*******************98 PP
3zf-C2H210.70.0016174192523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr +++  H+ t+
  OGLUM09G12720.1 174 DCGRVFSRVESFIEHQDTC 192
                      9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-56389No hitNo description
Gene3DG3DSA:3.30.160.602.1E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976688IPR007087Zinc finger, C2H2
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355100108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001135165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230144171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLGSCAPTTA GPPPDEATTP EPFRSLQIAT ASAGSAKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPTCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCNASRGQAA AVAEGGNVST AACGGVAVLE QEKQLDLQAP AAASLSRTAS  240
STSPSSDVVA SPVAWPGAGA PAMPSPKAVA FRGRFDMAPS PPPPSYDHYR GGAGAHNLEL  300
QLMPPFNAGG AAAAPGGMGA CFYAAAHHPT GVSQGNDAST QLQLSIGRGE VMGAAGTSDE  360
ASAAATAKEQ AREQLRQAMA EKEAAGEARA QARRQVELAE QELATARRMR HQAQVELNRA  420
HALRDHAVRQ VNATLLQITC FSCRHKFRAA AAGAPLPAAM SSDVACSYVS SVVTEGGDAD  480
EPLDVVDATR RRLQHANSMG IM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17140207370Zinc finger protein JACKDAW
5b3h_F2e-17140207370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKKRR
23641KKKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889640.0AK288964.1 Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610838.10.0protein indeterminate-domain 16
TrEMBLA0A0E0B3N80.0A0A0E0B3N8_9ORYZ; Uncharacterized protein
STRINGOGLUM09G12720.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-107indeterminate(ID)-domain 14