PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G13090.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 395aa    MW: 42108.2 Da    PI: 8.6417
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G13090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35261192103
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll
  OGLUM09G13090.1  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLL 110
                      9********************6667*****************************************999.........**************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  95 ekikrkkse 103
                      ++i+r+k++
  OGLUM09G13090.1 111 TEIHRRKTS 119
                      ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3615110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5722116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.72E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MERCGSWSDC EAAAAAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL TEIHRRKTSS  120
ASTASPSPPP FFAPPHFPLF HHPGVAAAQH HHAFVGDDGV VAAHGIGMPF PQPHWREPNL  180
PVATRLLALG GPAPSPSSVE AGGAGRAATA AVLMEENERL RRSNTALLQE LAHMRKLYND  240
IIYFVQNHVR PVAPSPAAAA FLQGLGMQAR KKPAAANVLN NSGGSTTSSS SLTIAEEPSP  300
PPQQQHLAGE KSGGEAGSSS AARSSAPTKL FGVHLSAAPC GAGSKRASSP EEHPPTSPAT  360
KPRLVLECDD LSLTVAPSSS SQQQLSAASS PTSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-23911813131Heat shock factor protein 1
5d5v_B8e-23911813131Heat shock factor protein 1
5d5v_D8e-23911813131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411900.0AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.10.0heat stress transcription factor B-4c
SwissprotQ67U940.0HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0B3T90.0A0A0E0B3T9_9ORYZ; Uncharacterized protein
STRINGOGLUM09G13090.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-79heat shock transcription factor B4