PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G13640.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 217aa    MW: 23156.2 Da    PI: 6.5398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G13640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-152978254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr+h+e+Er+RR+riN  +++Lr l+P+a   p  +++Ka+ L ++++Y+++L
  OGLUM09G13640.1 29 RRSHSEAERKRRERINAHLDTLRGLVPSA---PRVRMDKAALLGEVMRYVRKL 78
                     99***************************...*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5712778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-152781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-122781No hitNo description
SuperFamilySSF474593.79E-152782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-132978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-123384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-4123191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDVECLA AAPRWTRARR SHSEAERKRR ERINAHLDTL RGLVPSAPRV  60
RMDKAALLGE VMRYVRKLRS EAAGSAAVVP GEGDEVVVEE EEVEVEGCSC DAGERQAARR  120
VKASVCCADR PGIMSELGDA ERSVSARAVR AEIATVGGRT RSVLELDVAR TAAAGGGSNG  180
ASQLPALQAA LRAVIMSQEE LLAVEGYKQR RFSADFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057550.0AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875916.17e-81transcription factor bHLH131
TrEMBLA0A0E0B4021e-148A0A0E0B402_9ORYZ; Uncharacterized protein
STRINGOGLUM09G13640.11e-149(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-15bHLH family protein