PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G14350.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 996aa    MW: 107232 Da    PI: 7.5845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G14350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09825873355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OGLUM09G14350.1 825 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 873
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.0E-1045271IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.85377111IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93112142IPR002885Pentatricopeptide repeat
PfamPF015350.32116138IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.835143173IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0013145174IPR002885Pentatricopeptide repeat
PfamPF015350.055145172IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.446174204IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.3E-7176203IPR002885Pentatricopeptide repeat
PfamPF015354.2E-6176202IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.16212242IPR002885Pentatricopeptide repeat
PfamPF015350.18217237IPR002885Pentatricopeptide repeat
PfamPF130411.7E-11244291IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.652244278IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-6247279IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.675279310IPR002885Pentatricopeptide repeat
PfamPF144323.6E-39355475IPR032867DYW domain
CDDcd000831.17E-10820877No hitNo description
SuperFamilySSF474592.09E-16820890IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65822872IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16823889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6825873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11828878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMEKGIE VEERLSSALI NMYSKCGCIE GAVHVFENLG  240
AQMNVDTWNA MLAGFTANGC SEKALELFAR MEITGLVPNK ITFNTVLNAC SHGGFVEEGL  300
FDKAEKMIQM MPMKPDAAVW KALVGACKTH RNFELGRKAG HMLIEAAPND HAGSIEIDGV  360
IHEFISGDKS HSSKEDIYEM LSEMCQQLKV AGYVPDTSHV LLDIDDEDVK ESSLALHSEK  420
LAIAFGLIST APGTPIRIAK NLRVCGDCHN AVKLLSKIYG RCIIVRDANR FHHFREGSCS  480
CGDFWNPLLL LAPDGPLPTG AGRSTGKCLV SRPASAAVHN TGKRRACPVF SKGATNEKKR  540
RAGRDRRQAL LKERKLGIRS LEPRLGDSMD MSESSEKGME SNASSGPGNG IPVEWQSQFS  600
SAFACQPSVA AQHQQHAMMD SFAAASAGLW ASSDVVSAMS SAAPPRGAGF LAPVPGFLQQ  660
GLGHFPVDSG FIERAARSTC FGGGMMAGGP YGAADQAMGD AFGGTAEGLM DHHRNVGNDK  720
AEEFAGNGHD EVPSSEVAGG DCFSKGSDSK KRRRPNEVMG TDQVHSSNLP SDSANESVHS  780
KDKGEESSPA TTNGGKSKGK GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE  840
RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK  900
DLLRFPGVPS SSIGFSPEMM HPQLQLSQPG LIHGGTAGMA NPDVFRRIIQ AQLGAKDGSQ  960
MPHSLNGSFS DVSQMAYPSL GSQDLSIRPS QDGFQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-336233536338PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1522540KRRACPVFSKGATNEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612413.10.0pentatricopeptide repeat-containing protein At5g48910 isoform X1
TrEMBLA0A0E0B4A00.0A0A0E0B4A0_9ORYZ; Uncharacterized protein
STRINGOGLUM09G14350.40.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-66bHLH family protein