PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G14350.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 907aa    MW: 97644.5 Da    PI: 8.0923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G14350.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09736784355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OGLUM09G14350.2 736 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 784
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.103.0E-1046262IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.85377111IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93112142IPR002885Pentatricopeptide repeat
PfamPF015350.29116138IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.835143173IPR002885Pentatricopeptide repeat
PfamPF015350.049145172IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0013145174IPR002885Pentatricopeptide repeat
PfamPF130411.9E-8174213IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.446174204IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-8176210IPR002885Pentatricopeptide repeat
PfamPF144323.1E-39266386IPR032867DYW domain
SuperFamilySSF474591.83E-16731801IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-10731788No hitNo description
PROSITE profilePS5088815.65733783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16734800IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6736784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11739789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLAEKMIQ MMPMKPDAAV WKALVGACKT  240
HRNFELGRKA GHMLIEAAPN DHAGSIEIDG VIHEFISGDK SHSSKEDIYE MLSEMCQQLK  300
VAGYVPDTSH VLLDIDDEDV KESSLALHSE KLAIAFGLIS TAPGTPIRIA KNLRVCGDCH  360
NAVKLLSKIY GRCIIVRDAN RFHHFREGSC SCGDFWNPLL LLAPDGPLPT GAGRSTGKCL  420
VSRPASAAVH NTGKRRACPV FSKGATNEKK RRAGRDRRQA LLKERKLGIR SLEPRLGDSM  480
DMSESSEKGM ESNASSGPGN GIPVEWQSQF SSAFACQPSV AAQHQQHAMM DSFAAASAGL  540
WASSDVVSAM SSAAPPRGAG FLAPVPGFLQ QGLGHFPVDS GFIERAARST CFGGGMMAGG  600
PYGAADQAMG DAFGGTAEGL MDHHRNVGND KAEEFAGNGH DEVPSSEVAG GDCFSKGSDS  660
KKRRRPNEVM GTDQVHSSNL PSDSANESVH SKDKGEESSP ATTNGGKSKG KGAKETSESQ  720
KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA VMLDEIINYV  780
QSLQRQVEFL SMKLATVNPR LDLNIEGLLS KDLLRFPGVP SSSIGFSPEM MHPQLQLSQP  840
GLIHGGTAGM ANPDVFRRII QAQLGAKDGS QMPHSLNGSF SDVSQMAYPS LGSQDLSIRP  900
SQDGFQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-166224636338PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433451KRRACPVFSKGATNEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0B4A10.0A0A0E0B4A1_9ORYZ; Uncharacterized protein
STRINGOGLUM09G14350.40.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-66bHLH family protein