PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G14430.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 581aa    MW: 62587.3 Da    PI: 9.9813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G14430.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.1e-17309358255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OGLUM09G14430.3 309 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 358
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-19304375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-16305362No hitNo description
Gene3DG3DSA:4.10.280.106.5E-24305378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.952307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-15309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MFDSRQYGAA TRAAGNHHPR HRRRRSQAKP SEAKQREAKG RKACLVERRG LSSSRVGILA  60
LSPRHDWSGE RSRRVGSGGG REAVGLISEL QLWASKATTR EHDFLSLYTT AAKDPSLQLH  120
DAKPPHPSQG FFLRTHDFLQ PLEKPTPAPA PPPTSQLQQQ QQQAFPGGIG TFSISHVAGA  180
RPVAAAVVKA EPTPFVLWGQ PAAAAAAHPV AALGHHHHHH HQWTLPFAGV GQVAATAARQ  240
QQERKGRVGG GGFMDSGSRS SGGAGFDDDD GVAARREVSS SLKELTVRVD GKGGSCSGSG  300
TDQRPSSPRS KHSATEQRRR SKINDRFQIL RELLPHSDQK RDKATFLLEV IEYIRFLQEK  360
VQKFEASVPE WNQENAKILP WSKGQNPGDD LPDPSQFIRN GSSSGYNFTG KPDDNHNMVT  420
SAAASGAQEL VETDHAASVS YRSAETPTNI TNNVTSQAQA QWASPAGVDD CAMNSEMLNN  480
QQLAIDEGTI SLSSQYSQQL LGTLTHALES SGVDLSQASI SVQINLGKRA VKRPGADGSS  540
SSKELPSTSA NNENMGHQLM MLGGGTEELP HPTKRHKSGN S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0transcription factor BIM3 isoform X1
TrEMBLA0A0E0B4B50.0A0A0E0B4B5_9ORYZ; Uncharacterized protein
STRINGORUFI09G14830.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-51BES1-interacting Myc-like protein 2