PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G15160.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 324aa    MW: 33708.9 Da    PI: 4.6944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G15160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05273292120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  OGLUM09G15160.1 273 FSCPVCFKTFNRYNNMQMHM 292
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-5269295No hitNo description
PROSITE profilePS501579.64273300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-6273292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MENPYYASFL KNHHRRYCFS TPPSPSPSPA GAYSSSSFPF FPTAGVTSTT AATPPTTTAP  60
PSPPLREALP LLSLTPASRG GTTAAQERAR QRGEEDCTDD DDGAEEEGAD EEDVPGSTPG  120
GGGGGGGDRH HQLRRRRAGR LFADLNTKAA AGDPMDVEGS GSGCCAAEAA AAGDDDADVT  180
VALHIGLPSP TAAADLISGL SSAAGRRSST ARRDEEEDEA EEAGGASRDD GDGGDAADAA  240
APLGFASTPI GRLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR  300
KGPESLRGIQ PTAMLRLPCY CCAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611033.10.0zinc finger protein WIP2
TrEMBLA0A0E0B4L00.0A0A0E0B4L0_9ORYZ; Uncharacterized protein
STRINGOGLUM09G15160.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-49C2H2 family protein