PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G15460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 646aa    MW: 66839.2 Da    PI: 10.4006
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G15460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88.1e-112676446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                     W t E++ll++av ++G+g+W+++a +++         g+t+ +c++r++ 
  OGLUM09G15460.1 26 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRH 76
                     9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-62280IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-62481IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-52678IPR009057Homeodomain-like
PfamPF002497.2E-102675IPR001005SANT/Myb domain
PROSITE profilePS500906.4462678IPR017877Myb-like domain
CDDcd001678.53E-52658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MADGSDGPDV SPAAAAAGGG GGGEIWGTLE ELLLACAVSR HGTGSWDSVA MEVQTRSPLA  60
ARPGLTPTSC RLRFRHLHRR FSVGGAAEEE DDDEEAEEGG PDASAADGWM DELRRLRVAE  120
LRREVERCDL SIGTLQTKVK RLREEREQSI HGGGGGEGKP ETANGDERLS SEEPGRSCRE  180
SNSTDLKPAA RAGDHSVKAE EEDEDAAAAK QQASGESVAA SKESSDLRSS ASLRRRRRHK  240
PGADEDADGE EASAPRPPSQ SPSSSSSSQP LAALLDTFAA RFGPLLERLH ESQESDAYRG  300
AIRRHVDIEM VRRRLDASPA GGGGGGAAAA EFYRDLLLLC ANALVFFPRA GPERGAAAEA  360
RALVSASLRL REPKQEPGTA AAAAVAAAAG SPPAEDTRRA EGVVSVGGGG GGAGIVGSLI  420
EKGGKPLIVC RKRSSIAKAA AAAKKEESAE KGEAAEEGEG SDDGEKKVSV SASASKDKAW  480
GLRTKKGRGP GKNSASVGGR KMAKLSEATE AATDGSKKPD KKIAADAATP AKKRNAVDFL  540
KRLNQGSSPS KKKKKGSPMG TRKRAAAATS PEQPQKTRKG PGRKDAGRGG SKKGGKSATP  600
KRSVGRPPSK RGAAAATTPP PSKRAKVNRS EKTAATATAA KRGGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531553KKRNAVDFLKRLNQGSSPSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087620.0AC108762.2 Oryza sativa Japonica Group chromosome 9 clone OSJNBb0052C07, complete sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612366.10.0uncharacterized protein LOC9269664
TrEMBLA0A0E0B4P50.0A0A0E0B4P5_9ORYZ; Uncharacterized protein
STRINGOGLUM09G15460.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-13DNA-binding bromodomain-containing protein