PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G16460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 245aa    MW: 26008.1 Da    PI: 10.1079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G16460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.47e-3781411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdke 91 
                      lppGfrFhPtdeelvv+yL++++ +++l++  vi++v d   ++PwdLp    a++ e yfFs r+ ++a+  g  ++r + sgyWkatg +k+
  OGLUM09G16460.1   8 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAEKP 97 
                      79****************************.8999999***********...457889*******999986324456666799*********** PP

              NAM  92 vlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+ +         +++lvg+k+tL f +++ p+  +t+Wvmheyrl
  OGLUM09G16460.1  98 VFLRgfgcgggggGQHLVGVKTTLLFLRAKPPS--RTHWVMHEYRL 141
                      ****9999999887888**********666666..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-434177IPR003441NAC domain
PROSITE profilePS5100544.3898177IPR003441NAC domain
PfamPF023653.8E-239141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LSRPLPAAVI PDVHDAAVLD PWDLPGAGDG  60
EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGGG GQHLVGVKTT  120
LLFLRAKPPS RTHWVMHEYR LAAAGAVAVA AAGQTKRGNH SCMAQPGEWV VCRIFLKNNR  180
SSRRRAGDAD GETPVTGVHG HRRRQPSPSP SSSSCVTAEV SDGEGEEEVS SGSINGAPSA  240
SQREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-31717914170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605090.0AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.11e-136NAC domain-containing protein 83
TrEMBLA0A0E0B5371e-177A0A0E0B537_9ORYZ; Uncharacterized protein
STRINGOGLUM09G16460.11e-178(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-32NAC domain containing protein 83