PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17450.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 225aa    MW: 24562.6 Da    PI: 7.6372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-1884130252
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                      ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a++ 
  OGLUM09G17450.1  84 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARF 130
                      589******.7*********....4456*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-2084137IPR001471AP2/ERF domain
PfamPF008472.0E-1384130IPR001471AP2/ERF domain
PROSITE profilePS5103217.2484128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2284130IPR001471AP2/ERF domain
PRINTSPR003673.0E-88596IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1585130IPR016177DNA-binding domain
CDDcd000181.07E-1890128No hitNo description
PRINTSPR003673.0E-8107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MWHSGMWGLR GFHADSAATS DKTRTDGQTL GTEIRHLPHT WQRDVERQMA TNTIRSELMA  60
AQESGRMATA TGGVVAAKAR RGRRFVGVRQ RPSGRWVAEI KDSAQRVRLW LGTFDTAEEA  120
ARAYDEAARF ALAAVFRRCM QPAAATRQQC GAADTTVHVK NAVQPSFVVP RRTEAPPPPT  180
TPMLLAEDVL VDFDDDGLGS AGVETAFMVS SSLIVPSSFG IDDDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-156CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171528.13e-44ethylene-responsive transcription factor ERF095-like
TrEMBLA0A0E0B5H41e-162A0A0E0B5H4_9ORYZ; Uncharacterized protein
STRINGOGLUM09G17450.11e-163(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-08related to AP2 11