PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17730.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 244aa    MW: 26888.1 Da    PI: 6.2728
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.1e-08330431
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCll 31
                     ++C+ +e+ ++ lfC  ++  lC++C +
  OGLUM09G17730.1  3 TICDVCESAPAVLFCVADEAALCRSCDE 30
                     68************************87 PP
2zf-B_box27.56.3e-0985124237
         zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                      + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  OGLUM09G17730.1  85 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 124
                      6799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.13134IPR000315B-box-type zinc finger
PROSITE profilePS501198.902130IPR000315B-box-type zinc finger
PfamPF006432.2E-5331IPR000315B-box-type zinc finger
CDDcd000213.14E-6332No hitNo description
PROSITE profilePS501199.52784129IPR000315B-box-type zinc finger
SMARTSM003364.0E-1184129IPR000315B-box-type zinc finger
PfamPF006435.9E-785124IPR000315B-box-type zinc finger
CDDcd000211.32E-688117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCVAD EAALCRSCDE KVPPLSNPAF VLCSTTRTRR SPLAESNGSA  60
EEHDVHMCNK LARRHVRVGL ADPNKVQRCD ICENAPAFFY CEIDGTSLCL SCDMTVHVGG  120
KRTHGRYLLL RQRVEFPGDK PGHMDDVAMQ QKDPENRTDQ KKAPHSVTKE QMANHHNVSD  180
DPASDGNCDD QGNIDSKMID LNMRPVRTHG QGSNSQTQGV DVSVNNHDSP GVVPTCNFER  240
EANK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221720.0AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651327.11e-150B-box zinc finger protein 18
TrEMBLA0A0E0B5L00.0A0A0E0B5L0_9ORYZ; Uncharacterized protein
STRINGOGLUM09G17730.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.34e-70DBB family protein