PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G20340.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 318aa    MW: 33495.2 Da    PI: 6.798
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G20340.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.3e-07121163244
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 
                      rk+ ++ k+q  +Le+ F+++++++ ++++ LA++l+L+ +qV
  OGLUM09G20340.2 121 RKKLRLFKDQAAVLEDTFKEHNTVNPKQKAVLARQLNLKSQQV 163
                      566667799*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-8105163IPR009057Homeodomain-like
SuperFamilySSF466894.28E-6106163IPR009057Homeodomain-like
CDDcd000861.39E-4121163No hitNo description
PfamPF000463.6E-5121163IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVTGDETGAV AYLPIASSPP DQFPKSSSSS SGEAENPRSS TTPMAPRILY RDAGLDDDSE  60
DDLPAGFLGA AAAVGWTIRL SPAASYLNST LSSLNGKHGA PSAATAAGGG SDNEDSGGGS  120
RKKLRLFKDQ AAVLEDTFKE HNTVNPKQKA VLARQLNLKS QQVPGGGVVP EQEGENEAEA  180
DEGGLRAAQA LLRAAPAAAA TAARAPCPRP AEGERRERER KREGTKRGGR RERERMTCGA  240
HILLGPTIFI VGQHRHVSET ALQNYQESQV ALIRVTFKGV KVDLFHQRGQ VAEGGPALGR  300
TVDFGPFCMA QDAVSDSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125SRKKLRL
2214222RRERERKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654041e-112AK065404.1 Oryza sativa Japonica Group cDNA clone:J013006I17, full insert sequence.
GenBankCT8329441e-112CT832944.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F07, full insert sequence.
GenBankCT8329451e-112CT832945.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence.
GenBankX966811e-112X96681.2 Oryza sativa mRNA for DNA-binding protein (Oshox1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0B6M20.0A0A0E0B6M2_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.13e-13Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein