PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G20880.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 163aa MW: 18915.1 Da PI: 5.0211

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G20880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	129	5.5e-40	45	132	3	90
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 ++r + +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+ + + + ++ + a+p OGLUM09G20880.1 45 GRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSSVSQPPPTQQQLQAAEP 132 57888899************************************************************77665533333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.3E-36	46	135	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MQQQQQAMEE DGVKEEEEEY YLEEEDEGEE ETRPPLQQQQ QVGLGRRGRA REEKERTKLR 60 ERQRRAITAR ILAGLRRHGN YNLRVRADIN EVIAALAREA GWVVLPDGTT FPSSSSVSQP 120 PPTQQQLQAA EPELSELEAK YRRVASGFRI QLTEKHMFVW KDI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005546	0.0	AP005546.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1003_C09.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	O80831	1e-35	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0E0B6U0	1e-113	A0A0E0B6U0_9ORYZ; Uncharacterized protein
STRING	OGLUM09G20880.1	1e-114	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19695	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	2e-24	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]