PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G02320.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 146aa    MW: 14839.3 Da    PI: 8.4883
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G02320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.3e-07114143433
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeL 33 
                        ++t++q+e+Le++++++++ps ++r++L
  OGLUM10G02320.1 114 YVQYTPDQVEALERVYAECPKPSFSRRQQL 143
                      6789************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-793143IPR009057Homeodomain-like
SuperFamilySSF466893.77E-595143IPR009057Homeodomain-like
PfamPF000461.6E-4114143IPR001356Homeobox domain
CDDcd000865.69E-5117143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASSTLWLRP RGEGGGGTRP SCRRCSPPPS PSTCGDGGGG GGGRADPAPD AGGSAVVPPP  60
FPCGGSGEGG EGGNFGGGGG RRGGWRQRWR CPMRSGSGSD GGGYDKAGMD SGKYVQYTPD  120
QVEALERVYA ECPKPSFSRR QQLLCE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-112CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0B7V39e-95A0A0E0B7V3_9ORYZ; Uncharacterized protein
STRINGOGLUM10G02320.11e-95(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.13e-15HD-ZIP family protein