PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G03200.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 356aa MW: 39592.4 Da PI: 10.0063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G03200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F+++ + H ++H OGLUM10G03200.1 44 FACRVCGKRFPSQQAMAGHCSSH 66 78*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	9.1E-6	44	66	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.388	44	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA 60 GHCSSHTRST AAATRITSAR QLLPPPPQSS LSPPPPLPVV ALTVQLAVLF WRLTPLLAAA 120 AVADWSQVAA GIPLSKEQLV VAVAIVVADD GQGQAAEVFL LDLAAEELNL GPSMNNEATS 180 IPKVTVRWVR SVYEYFTEAF DLLKEDNVQW CPYMEEETQR RAPANLNTLY LRDSSYWLTK 240 KMIVYDIAVE VYNLQRGDIA EELYSDTTSL WEKLRDNIAG SLEEMMSALD RMRQKCKRIM 300 RRHRAGMHQK STVPQDTGLR TPYWNNRLPL LGLPHRQDPQ LPHVLGRRQG LWHRLR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA  60
GHCSSHTRST AAATRITSAR QLLPPPPQSS LSPPPPLPVV ALTVQLAVLF WRLTPLLAAA  120
AVADWSQVAA GIPLSKEQLV VAVAIVVADD GQGQAAEVFL LDLAAEELNL GPSMNNEATS  180
IPKVTVRWVR SVYEYFTEAF DLLKEDNVQW CPYMEEETQR RAPANLNTLY LRDSSYWLTK  240
KMIVYDIAVE VYNLQRGDIA EELYSDTTSL WEKLRDNIAG SLEEMMSALD RMRQKCKRIM  300
RRHRAGMHQK STVPQDTGLR TPYWNNRLPL LGLPHRQDPQ LPHVLGRRQG LWHRLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC097447	0.0	AC097447.4 Oryza sativa Japonica Group chromosome 10 clone OSJNBb0042K08, complete sequence.
GenBank	AC174464	0.0	AC174464.1 Oryza sativa (japonica cultivar-group) chromosome 10 BAC clone OSJNBb0094D21, complete sequence.
GenBank	AK107618	0.0	AK107618.1 Oryza sativa Japonica Group cDNA clone:002-131-D01, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0B855	0.0	A0A0E0B855_9ORYZ; Uncharacterized protein
STRING	OGLUM10G03200.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17625	6	6