PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G03200.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 283aa    MW: 30648.3 Da    PI: 10.9021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G03200.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-054466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C  Cgk+F+++  +  H ++H
  OGLUM10G03200.4 44 FACRVCGKRFPSQQAMAGHCSSH 66
                     78*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-54369No hitNo description
PfamPF139126.8E-64466IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3884471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA  60
GHCSSHTRST AAATRITSAR QLLPPPPQSS LSPPPPLPVV ALTVQLAVLF WRLTPLLAAA  120
AVADWSQVAA GIPLSKEQLV VAVAIVVADD GQGQAAEVFL LDLAAEELNL GPSMNNEATS  180
IPKGDIAEEL YSDTTSLWEK LRDNIAGSLE EMMSALDRMR QKCKRIMRRH RAGMHQKSTV  240
PQDTGLRTPY WNNRLPLLGL PHRQDPQLPH VLGRRQGLWH RLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0974470.0AC097447.4 Oryza sativa Japonica Group chromosome 10 clone OSJNBb0042K08, complete sequence.
GenBankAC1744640.0AC174464.1 Oryza sativa (japonica cultivar-group) chromosome 10 BAC clone OSJNBb0094D21, complete sequence.
GenBankAK1076180.0AK107618.1 Oryza sativa Japonica Group cDNA clone:002-131-D01, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0B8580.0A0A0E0B858_9ORYZ; Uncharacterized protein
STRINGOGLUM10G03200.13e-94(Oryza glumipatula)