PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G03200.5
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 187aa    MW: 19270.1 Da    PI: 10.3221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G03200.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-054466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C  Cgk+F+++  +  H ++H
  OGLUM10G03200.5 44 FACRVCGKRFPSQQAMAGHCSSH 66
                     78*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-54369No hitNo description
PfamPF139123.8E-64466IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3884471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA  60
GHCSSHTRST AAATRITSAR QLLPPPPQSS LSPPPPLPVV ALTVQLAVLF WRLTPLLAAA  120
AVADWSQVAA GIPLSKEQLV VAVAIVVADD GQGQAAEVFL LDLAAEELNL GPSMNNEATS  180
IPKALNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0974470.0AC097447.4 Oryza sativa Japonica Group chromosome 10 clone OSJNBb0042K08, complete sequence.
GenBankAC1744640.0AC174464.1 Oryza sativa (japonica cultivar-group) chromosome 10 BAC clone OSJNBb0094D21, complete sequence.
GenBankAK1076180.0AK107618.1 Oryza sativa Japonica Group cDNA clone:002-131-D01, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0B8591e-130A0A0E0B859_9ORYZ; Uncharacterized protein
STRINGOGLUM10G03200.11e-125(Oryza glumipatula)