PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G03910.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 486aa    MW: 54368.7 Da    PI: 4.3755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G03910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.2e-31331651128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkatg 87 
                      l pG++F P+deelv++yL+ k+e+++l++ ++i+evdi++++P +L +k+k+ +e++wyfF+ r+ +++ +++++nr+     +++g W+atg
  OGLUM10G03910.1  33 LSPGYHFVPSDEELVDYYLRGKIEQRRLPM-DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSATG 125
                      579***************************.99**************8555554888*****9988766615779999656666679******* PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++ k +++++g+k++L++   +a+++e+ +W mhey +
  OGLUM10G03910.1 126 SVAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 165
                      ******99667779********9..5666669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3625182IPR003441NAC domain
PROSITE profilePS5100536.53933182IPR003441NAC domain
PfamPF023652.8E-1835164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTAESNGGNS SSAATTVSNG GRRRHELVPK LRLSPGYHFV PSDEELVDYY LRGKIEQRRL  60
PMDFINEVDI MSFDPVKLIE KYKGYGENRW YFFTVRKPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVAYI CGKDHETVIG TKRVLTYKSA RSAEEDKWSM HEYVMLDKSQ MDQYVLCAIQ  180
LKQTYEAENK AQEEEERGVK RKRTATRKRR KGDIDQTTSQ EQEDQQQETP PPGDPHDQSV  240
VDAPYYSMQM TLGGEEEVAP VPWCADCMAQ PDRIEYPAVW YNQQEQQPLQ LVDRSMMTQG  300
YIGDLSYIQN QFDQQQAHDH GSINAFDEAL DQCHDTNFAW DNAGIYPGNN LIDGNLDDDT  360
QDQFGNQATL GAFTGELEYG TGYQFHDALQ ATPGSDDASA QSRGIQPAAG HSMGDDDEAC  420
CNDDLSSLLA DISRILLDGN GVINNAGNPE GSNQGLLICK DGHQWPLEES TMPTVECVLQ  480
HPGESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-18201832169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0B8E30.0A0A0E0B8E3_9ORYZ; Uncharacterized protein
STRINGOGLUM10G03910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-23NAC-like, activated by AP3/PI