PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G05830.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 248aa    MW: 27632.9 Da    PI: 7.29
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G05830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY253.8e-0853962059
                     S-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY 20 fprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                       r YYrC+++   +C+++k v++++  dp +  +tY   H+++
  OGLUM10G05830.1 53 IYRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 96
                     5699******99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.83E-94797IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-94996IPR003657WRKY domain
SMARTSM007743.4E-84997IPR003657WRKY domain
PfamPF031065.3E-115495IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASRHQLQTM QFTDPASRSP RPGGGVHGQP QPTPMSSPFS SRKPRRWCKT VAIYRLYYRC  60
SYRDDRNCMA TKVVQQENDA DPPLYRVTYI HPHTCNPSPP APTPAHVFTE PPPAKAEEHH  120
AVLFRFSSTA GGHTPNNAVH RQQWQPAAAT MAAGAQAQLS MTMSDDEREQ PPAAIRSAPP  180
ARRLSMFRAV VDGLRQMRSS APPTPSSSMV VDDGWDTFSS FDLDTCEFSV DDELLCGDHM  240
YFPDSMQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997740.0AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.21e-148probable WRKY transcription factor 32
TrEMBLA0A0E0B9150.0A0A0E0B915_9ORYZ; Uncharacterized protein
STRINGOGLUM10G05830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.14e-11ABA overly sensitive mutant 3