PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G07640.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 572aa    MW: 66060.9 Da    PI: 6.6723
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G07640.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM21.85.3e-071510432128
              NAM  32 evikevdiykvePwdLpkkvkaeekewyfFsk.rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124
                      +++  vd++ ++P+d p       + w+   + ++  y  +++  r++k+gyWk      ++ + +++  g+k  L f++g++p g+++  +m 
  OGLUM10G07640.4  15 NILVGVDLTMIDPRDSP------GTLWFLNWPdNQLCYDDENNVFRKAKNGYWKCVDA-CRIQT-GTSILGVKLCLEFHEGQTPCGTRSGLMMY 100
                      55677777788888777......2345443330344566778888999******8866.56766.8999************************* PP

              NAM 125 eyrl 128
                      ey +
  OGLUM10G07640.4 101 EYLI 104
                      **75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.571125IPR003441NAC domain
SuperFamilySSF1019411.57E-212125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MFLAERKTWD PLPQNILVGV DLTMIDPRDS PGTLWFLNWP DNQLCYDDEN NVFRKAKNGY  60
WKCVDACRIQ TGTSILGVKL CLEFHEGQTP CGTRSGLMMY EYLIEQNDEL NLPQAYKSLC  120
RMFLQEDRKI VEDEHISLNL GVHHNFLGSY SQYLAEIQRQ NMVMNSQTKK VSSSENWMNE  180
KARNGQAQGS TDKRFLIFGV YVTDHLFDNQ LKLLNIITRL NNYLELMIEE PRFSSIAYVR  240
LDSQVKKLDK EYTSAMDLSS SLHQMLQKLN LRVQDEEVWV SQLGSNLQAS FRKIMDTSSE  300
IGKLEDEVLQ LKVDIAEFAP GEVTSCAVYE MIKTLQIVEL FMNNSTRHLK LIDGINSEMR  360
EFGSIFNGKV RCLVRFARYQ QTIMEKSTQI INFLGDIRAK VDKMTQMYGL SEVVPIDSNQ  420
FIEGSFNADA YGTCSYYATL SSVESLYKRE YASYPTILKD KIGQPDEFLV NLSRAQLEDI  480
VEDFYTRHKV KGSKRLNVCL DKMKNEGVIS EESYMNPQAQ MRMKEHIFLT KIKKVIESHI  540
MDGKVLIASF RITTGCYLIK STKFQKKIPN MN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0645520.0AK064552.1 Oryza sativa Japonica Group cDNA clone:002-112-C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612853.10.0uncharacterized protein LOC4348481 isoform X7
TrEMBLA0A0E0B9Q30.0A0A0E0B9Q3_9ORYZ; Uncharacterized protein
STRINGOGLUM10G07640.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-11NAC domain containing protein 83