PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G07770.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1052aa    MW: 117516 Da    PI: 5.9809
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G07770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.9e-56251422118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  OGLUM10G07770.1  25 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 118
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  OGLUM10G07770.1 119 QRRTYWMLEEDFMHIVLVHYLETK 142
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.15721147IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7724142IPR005559CG-1 DNA-binding domain
PfamPF038598.7E-5027140IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-6472558IPR013783Immunoglobulin-like fold
CDDcd001020.00553472560No hitNo description
PfamPF018331.9E-8473551IPR002909IPT domain
SuperFamilySSF812962.96E-18473559IPR014756Immunoglobulin E-set
SuperFamilySSF484032.8E-15665768IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-16667770IPR020683Ankyrin repeat-containing domain
CDDcd002042.03E-11668766No hitNo description
PROSITE profilePS5029715.433674768IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736707739IPR002110Ankyrin repeat
SuperFamilySSF525405.31E-8866920IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748870899IPR000048IQ motif, EF-hand binding site
PfamPF006120.024871890IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059892914IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542894917IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4895914IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1052 aa     Download sequence    Send to blast
MAADARRFAV VPQLGEHNAD IAQILKEAQQ RWLRPAEICE ILKNYKSFRI APEPPNRPQS  60
GSLFLFDRKV LRYFRKDGHN WRKKKDGKTV KEAHERLKSG SIDVLHCYYA HGEENENFQR  120
RTYWMLEEDF MHIVLVHYLE TKKSLNPHCI VLCDYELQGG KSRTRGNNDM HQAAVMDSPL  180
SQLPSQTIDG ESSLSGQFSE YEEAESGGTG YHSFTQMQQQ QNGIGPVTDA SMFSSRVSAS  240
SIGNYQGQHA MGHTTNFYSS SQHDSPLVLS DPNLELENNG HESLWNGVMK PDEGTVQMTH  300
LQPPVHPEQG MFTTEGQGVE YLTFDEVYSD GLSLKDIGAA GADVEPFWQF SSNSYLTEAI  360
AFQLSSATAD ISATENSVQQ NDGSLGAAIG FPFLKTQSSN LSDILKDSFK KSDSFTRWMS  420
KELLDVEDSQ IQSSSGAYWN TEEADSIIEA SSREPLDQFT VAPMVLQDQL FSIVDFSPSW  480
TYAGSKTKVL VTGRFLHANE VTERCKWSCM FGEVEIQAEI SADGTLRCYS PPHKPGRVPF  540
YVTCSNRLAC SEVREFEFRP SDSQYMDAPS PLGATNKVYF QIRLDNLLSL GPDVYQATIT  600
NPSKEMIDLS KKISSLLANN DEWSKLLKLA DDNEPLSHDQ QDQYAENLIK EKLHVWLLHK  660
VGNGGKGPSV LDDEGLGVLH LAAALGYDWA IRPTVTAGVN INFRDFHGWT ALHWAAFCGR  720
ERTVVALIAL GAAPGALTDP HPNYPAESTP ADLASANGHK GISGFLAESS LTSHLQALNL  780
KEANMSEISG LPGIGDITER NASQPAIGDS LGAVRNAAQA AARIYQVFRV QSFQRKQAVQ  840
YEGDKGGISD EHTLSLLSMK PSKSGQLDPL HAAASRIQNK YRGWKGRKEF LLFRQRIVKI  900
QAHVRGHQVR KHYRKIVWSV GIVEKVILRW RRRRAGLRGF RPTEGAIESS SGGTSSNLVT  960
DKPAGDDYDF LQEGRKQTEE RLQKALARVK SMVQYPEARD QYQRILNVVS KMQESQTVQE  1020
KILDESTEMD EGDFMSEFKE LWDDDTPLPG YF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614397.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A0E0B9S20.0A0A0E0B9S2_9ORYZ; Uncharacterized protein
STRINGOGLUM10G07770.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains