PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G08720.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 161aa    MW: 17368.4 Da    PI: 11.3892
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G08720.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.26e-148715366127
              NAM  66 kkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      +k+++++r+ r+++ g+Wka+ ++k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  OGLUM10G08720.3  87 TKARNKRRPMRVADGGTWKASDESKTVRSKkvGGIDVGQKFTMVFYerrFEGDQNPIKTNWGMHEFT 153
                      46678899********************99888899**********43313456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.69217161IPR003441NAC domain
PfamPF023655.4E-785153IPR003441NAC domain
SuperFamilySSF1019417.45E-1687159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGTAAAAVEA TATMGSGRGR RRWCRSTART GTACLSASTS SPRTWSSSPS SCASSSEERS  60
PAPSTTSSSI SGYLNSTPPS SMRQFATKAR NKRRPMRVAD GGTWKASDES KTVRSKKVGG  120
IDVGQKFTMV FYERRFEGDQ NPIKTNWGMH EFTKIIPGTK N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221441e-129AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149661e-129AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.17e-42NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0BA431e-112A0A0E0BA43_9ORYZ; Uncharacterized protein
STRINGOBART10G08900.12e-45(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-07NAC family protein