PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G08810.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 222aa MW: 24485.2 Da PI: 9.9858

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G08810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	74.9	1.6e-23	123	179	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++I++RRq+R+ + +e+k+ ++ rk++l e+R+k+A+ R+Rg+gGrF OGLUM10G08810.1 123 DEPIYVNAKQYHAIIRRRQRRKIVGSEDKV-AAIRKRILVEARQKQAKLRRRGKGGRF 179 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.4E-17	121	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	22.337	122	182	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-16	124	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-13	125	147	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-13	156	179	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGFGESTQGN QRKLDGPGKV STELSLVNLE AKNLHPKPEC NQPLVSSPFI GKEKWKVAAP 60 KEELETLIFC PVSTADKELE VHMANIAKLA YSLVLLLKGI EHIPTKGMKC TPLLPLPTEH 120 ADDEPIYVNA KQYHAIIRRR QRRKIVGSED KVAAIRKRIL VEARQKQAKL RRRGKGGRFI 180 SIEHPLELSM DDQISKNGGS ASPSSSTVSE NSSNVNGFTG DL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-13	123	181	2	60	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU847005	0.0	EU847005.1 Oryza sativa Japonica Group clone KCS241E10 CCAAT-binding transcription factor mRNA, complete cds.
GenBank	HQ731478	0.0	HQ731478.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613426.1	4e-69	nuclear transcription factor Y subunit A-3
TrEMBL	A0A0E0BA53	1e-162	A0A0E0BA53_9ORYZ; Uncharacterized protein
STRING	OGLUM10G08810.1	1e-163	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17468	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	8e-16	nuclear factor Y, subunit A5