PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G08930.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 237aa    MW: 26236.1 Da    PI: 10.1927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G08930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM805e-25612201127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk........................kvkaeekew.yfFskr..dk 66 
                      +p+Gf F P+d el    ++k v+g+   + ++v+++++i++++P  L++                         +++ e+ + yfFs+r  + 
  OGLUM10G08930.1  61 MPVGFYFVPKDLELFAILMCKLVRGEVPGAlNNVFEHIRILEFHPALLHAaitedlkpcssssssspamacaetYIENMEDGCiYFFSRRlfAA 154
                      699**************99999*99996551456999***********8558999******999999988776534444444459999984446 PP

              NAM  67 kyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+++++r+ r+++ g+Wka+g +k+v sk  +g +vg k t+vfy    + +++++kt+W mhey+
  OGLUM10G08930.1 155 KARNKRRPMRVANGGTWKASGGSKTVRSKkvGGIDVGQKLTMVFYerrFEGDQNPVKTNWAMHEYT 220
                      666899*********************99888899**********44313466779*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-2755229IPR003441NAC domain
PROSITE profilePS5100528.95961237IPR003441NAC domain
PfamPF023651.4E-1462220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAYAVVRNPM PDGGEFIPRH TTREQPADGD GGGSGGSNNN NGKLKGKEKV VPEYGKNRHG  60
MPVGFYFVPK DLELFAILMC KLVRGEVPGA LNNVFEHIRI LEFHPALLHA AITEDLKPCS  120
SSSSSSPAMA CAETYIENME DGCIYFFSRR LFAAKARNKR RPMRVANGGT WKASGGSKTV  180
RSKKVGGIDV GQKLTMVFYE RRFEGDQNPV KTNWAMHEYT KIIHGSKNQS NIKLKKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.12e-96NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0BA681e-177A0A0E0BA68_9ORYZ; Uncharacterized protein
STRINGOGLUM10G08930.11e-178(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.36e-12NAC family protein