PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G09660.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 237aa    MW: 25909.5 Da    PI: 8.7717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G09660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.35e-092288162
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeek...ew.yfFs 62
                     lp+GfrF P+d+el+ + L  k++g +    l+ v+++++i++++P +L ++++ + +   ++ +fFs
  OGLUM10G09660.1 22 LPRGFRFVPQDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYATASRSLSlslSLpFFFS 88
                     799************.88*********53333456**************7432221112222246665 PP
2NAM40.86.8e-1311919254127
              NAM  54 eek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      ee+  +yfFs+ + k+a   ++k ++ra++ g+Wka   + ++++ +g  vg k ++ fy     kg++t+W mhe+ 
  OGLUM10G09660.1 119 EENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVLGSSQLVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 192
                      3332559**998777663335778899********98887888887**************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-101773IPR003441NAC domain
PROSITE profilePS5100519.99322212IPR003441NAC domain
PfamPF023652.4E-1223191IPR003441NAC domain
SuperFamilySSF1019411.03E-15119210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAAPGDGEEK KGAGSGKNKH GLPRGFRFVP QDQELLDILD DKLRGAPLDR ALDAVFHDTR  60
ILDFHPAKLY ATASRSLSLS LSLPFFFSGD GLGALGDLIL IRGGLDWFGG DAGMYAEDEE  120
NGYIYFFSTI EFKAAKPKQK KWPRRAAQGG RWKAVLGSSQ LVEVGGVPVG RKLSMEFYVK  180
GVRTNWGMHE FVRIVGPNIE VADLAVYRLH KLWTNGEEKP GDLAADVAAK STNQSGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.11e-125uncharacterized protein LOC4348616
TrEMBLA0A0E0BAG51e-171A0A0E0BAG5_9ORYZ; Uncharacterized protein
STRINGOGLUM10G09660.11e-172(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.14e-08NAC domain containing protein 3