PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G11380.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 124aa MW: 13307.5 Da PI: 8.8599

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G11380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.6	9.6e-21	11	62	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g OGLUM10G11380.1 11 TKYRGVRRRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAYAQRG 62 69******.******8333..4*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.09E-15	11	48	No hit	No description
Pfam	PF00847	9.3E-15	11	62	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.421	12	70	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-31	12	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.9E-31	12	71	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-23	12	71	IPR016177	DNA-binding domain
PRINTS	PR00367	3.8E-12	13	24	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-12	36	52	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MEDDRSKDTA TKYRGVRRRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAYAQ 60 RGAAAVLNFP AAAAAGRGGG AGGAASGSSS SSSAQRGRGD KIEFEYLDDK VLDDLLDDEK 120 YRGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-31	12	111	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025907	0.0	AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614004.1	5e-81	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	3e-36	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A3C573	2e-80	A3C573_ORYSJ; Uncharacterized protein
STRING	OGLUM10G11380.1	7e-81	(Oryza glumipatula)
STRING	ORGLA10G0102500.1	7e-81	(Oryza glaberrima)
STRING	OBART10G11630.1	7e-81	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21883	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	8e-17	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]