PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G12240.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 302aa    MW: 34547.2 Da    PI: 6.5842
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G12240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.98.4e-27159212155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k rl Wt++LH++F+ av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQkYR+
  OGLUM10G12240.1 159 KSRLTWTTQLHRQFIAAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQKYRM 212
                      68*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011010.694188IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521725.12E-1022104IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-849101No hitNo description
PROSITE profilePS5129412.473156215IPR017930Myb domain
SuperFamilySSF466894.39E-19157216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26158216IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24159212IPR006447Myb domain, plants
PfamPF002493.6E-7161211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MINGVIHSIE VIMDHRELWP YGLRVLVIDD DCSYLSVMED LLLKCSYKVM ASSGDTNTVM  60
KYVANGASDF LLKPVRIEEL SNIWQHIFRK QIQDHKNNNM VGNLEKPGHP PSILAMARAT  120
PATTRSTATE ASLAPLENEV RDDMVNYNGE ITDIRDLRKS RLTWTTQLHR QFIAAVNHLG  180
EDKAVPKKIL GIMKVKHLTR EQVASHLQKY RMQLKKSIPT TSKHGATLSS TALDKTQDHP  240
SRSQYFNQDG CMEIMDYSLP RDNLSSGSEC MLEEQNDYSS EGFQDFRWDS DKQEYGPCFW  300
NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18158216462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6092450.0KC609245.1 Oryza glumipatula early heading date 1 (Ehd1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876814.10.0two-component response regulator ORR30
SwissprotQ7Y0W30.0EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A0E0BBD90.0A0A0E0BBD9_9ORYZ; Uncharacterized protein
STRINGOGLUM10G12240.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-34response regulator 1