PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G15140.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 311aa    MW: 32815.3 Da    PI: 8.6094
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G15140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY77.15.6e-2454105455
            YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 
                      +s  eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++    
  OGLUM10G15140.1  54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLL 105
                      56789***************************************99987664 PP
2YABBY131.51.1e-40199265106170
            YABBY 106 deevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +e +pr+    ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  OGLUM10G15140.1 199 KEPSPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 265
                      4455555544489****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-2356107IPR006780YABBY protein
PfamPF046905.3E-39199265IPR006780YABBY protein
SuperFamilySSF470958.12E-8207258IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-4214257IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSSSSSSSAS SAAAAAFRPD VVQREQQVVE EKFPAAAAAM REMVLPPVAA VAADSEQEQL  60
CYVHCHYCDT VLVVSVPSSS LFKTVTVRCG HCSSLLTVNM RGLLLPTTAA AAPPPPPPPP  120
PPPPPPAAHF PHSLNLAPAN PPHHHSLLDE ISTANSPTQL LLEQHGLGGL MASAASCRNN  180
NSPAAPPPPP TSQGKAAAKE PSPRTNTAVI NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP  240
DISHREAFSA AAKNWAHFPH IHFGLMPDHQ GLKKTSLLPQ DHQRKDGLLK EGLYAAAAAA  300
AAAANMGVAP Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740150.0AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613818.11e-169protein YABBY 3 isoform X1
SwissprotQ8L5561e-170YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A0E0BCI60.0A0A0E0BCI6_9ORYZ; Uncharacterized protein
STRINGOGLUM10G15140.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-44YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]