PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G16960.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 151aa    MW: 17509.2 Da    PI: 10.1407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G16960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+lye++s
  OGLUM10G16960.2  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 59
                     79***********************************************86 PP
2K-box46.41.7e-1679143670
            K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                      ++++ +++ ++ + +   L k++e L ++ R++lGe+Le +s++eL+ Le +Leksl +iR kK 
  OGLUM10G16960.2  79 NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKV 143
                      445778889999***************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-31323IPR002100Transcription factor, MADS-box
CDDcd002652.86E-40379No hitNo description
SuperFamilySSF554557.33E-32385IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014869.7E-1584142IPR002487Transcription factor, K-box
PROSITE profilePS512979.49287151IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVRGRTELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGRLYEFASA  60
PSLQKTIDRY KAYTKDHVNN KTIQQDIQQV KDDTLGLAKK LEALDESRRK ILGENLEGCS  120
IEELRGLEMK LEKSLHNIRL KKVYISYFQY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18177176MEF2C
5f28_B4e-18177176MEF2C
5f28_C4e-18177176MEF2C
5f28_D4e-18177176MEF2C
6byy_A4e-18177176MEF2 CHIMERA
6byy_B4e-18177176MEF2 CHIMERA
6byy_C4e-18177176MEF2 CHIMERA
6byy_D4e-18177176MEF2 CHIMERA
6bz1_A4e-18177176MEF2 CHIMERA
6bz1_B4e-18177176MEF2 CHIMERA
6bz1_C4e-18177176MEF2 CHIMERA
6bz1_D4e-18177176MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8418610.0CT841861.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105F20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614799.14e-97MADS-box transcription factor 56
SwissprotA2Z9Q71e-101MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A0E0BD541e-106A0A0E0BD54_9ORYZ; Uncharacterized protein
STRINGORGLA10G0119200.12e-99(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.17e-60AGAMOUS-like 14