PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G18330.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 388aa MW: 39727.9 Da PI: 7.7794

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G18330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.7	6.5e-18	279	314	1	36
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ OGLUM10G18330.1 279 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 314 ********************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.3E-16	273	323	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.253	273	309	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.09E-13	277	337	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.6E-13	277	311	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.21E-13	278	325	No hit	No description
PROSITE pattern	PS00344	0	279	304	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.4E-15	279	314	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH 60 QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHHIGGM GEPSGATPSA 120 TSSDHQTSML SFADDFYIPT EDAAELEWLS KFVDDSYSDM PNYQSSAHAA MAAAAASAAN 180 NGGGSSAGQD SCLTAAPGRG ARSKRSRATA AAAAAWHSLV PRPPSQSSPS SSCSSSDFPS 240 SNKPSGAARP NGSGGGSRGK KSPGPAGAEV GMEAGVRRCT HCASEKTPQW RTGPLGPKTL 300 CNACGVRFKS GRLMPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKELLIIR GSHRDAAAAA 360 AAAAAAAAAG SAAATGRPEL MFRDYGVC

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH  60
QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHHIGGM GEPSGATPSA  120
TSSDHQTSML SFADDFYIPT EDAAELEWLS KFVDDSYSDM PNYQSSAHAA MAAAAASAAN  180
NGGGSSAGQD SCLTAAPGRG ARSKRSRATA AAAAAWHSLV PRPPSQSSPS SSCSSSDFPS  240
SNKPSGAARP NGSGGGSRGK KSPGPAGAEV GMEAGVRRCT HCASEKTPQW RTGPLGPKTL  300
CNACGVRFKS GRLMPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKELLIIR GSHRDAAAAA  360
AAAAAAAAAG SAAATGRPEL MFRDYGVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069300	0.0	AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBank	AK242292	0.0	AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613303.1	0.0	GATA transcription factor 2
Swissprot	O49741	4e-61	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A0E0BDM4	0.0	A0A0E0BDM4_9ORYZ; GATA transcription factor
STRING	OGLUM10G18330.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4621	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	2e-45	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]