PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G01380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 238aa    MW: 25607.4 Da    PI: 4.4188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G01380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-1013411848
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +lG++ W++Ia++++  Rt++++k++w+++l
  OGLUM11G01380.1 13 LLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 41
                     69*99.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.266145IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-141342IPR009057Homeodomain-like
PfamPF002491.0E-81341IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-81346IPR009057Homeodomain-like
CDDcd001674.37E-71641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEYNNGHGIF ESLLGNRWAA IASYLPQRTD NDIKNYWNTH LKKKLAAAAN STSAASNRHP  60
IFADATFPSA AGSHTVSSNS DVNQMAAIAR RSPFADCPSS SYASSMDNIS KLLDGFMKTN  120
SPSPPPPPLQ HYDGGYYDDV KPAVDVVGNP LLSSFDCMSG ADLDCCFDVH QQQPASSFME  180
YGGYGGGYGD ESKQQLMNQA AAPLSSIEKW LFDEAAAAEQ VADLMDLSDG CCSVPMMF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235250.0AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2415490.0AK241549.1 Oryza sativa Japonica Group cDNA, clone: J065176M15, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616542.11e-137myb-related protein 306
TrEMBLA0A0E0BET21e-177A0A0E0BET2_9ORYZ; Uncharacterized protein
STRINGOGLUM11G01380.11e-177(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-15myb domain protein 60