PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02060.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 531aa    MW: 57689.5 Da    PI: 6.566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.87.2e-223394642127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      + GfrF+P+ e+l+++yL + ++gk+++ +e  i ++d+y +eP+dL  k     +   e+    fF++ ++++ +++rk+r++ +g+W  + +
  OGLUM11G02060.1 339 TLGFRFNPSAEDLITFYLPRLIAGKPTKDTEKfICRADVYGSEPSDLAgKfapvpR--CEKGGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS 430
                      67************************6654544**************843454222..2445779999999999****************8866 PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       k v++k g +vg  + + f     ++g+ tdW+m+e +
  OGLUM11G02060.1 431 -KGVKNKAGVKVGETQNFRFK----KDGSYTDWLMEEHH 464
                      .889999*************7....78999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534743.98E-3921313IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18208.7E-5629313IPR029058Alpha/Beta hydrolase fold
PfamPF078592.7E-3696309IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF1019413.66E-23332485IPR003441NAC domain
PROSITE profilePS5100524.674338485IPR003441NAC domain
PfamPF023652.0E-11341464IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA ATFMVLVPPY  60
DDPRDGVTVH DVATDHGVDV RLYLTTTAPA RRRPVLVHFH GGGFCLSHAA WSLYHRFYAR  120
LAVDLDVAGI VSVVLPLAPE HRLPAAIDAG HAALLWLRDV ASGGSDTIAH PAVERLCGAA  180
DFSRVFLIGD SAGGVLVHNV AARASEAGAE ALDPIRLAGG VQLHPGFILP EKSPSELENP  240
PTPFMTQETV DKFVVLALPG AQLPPMLVMV AEEDMLRDAQ TEYGEAMARA GKAVETVVSR  300
GRGIGHVFYL NWFAVESDPV AAARARELVD AQYVEKMLTL GFRFNPSAED LITFYLPRLI  360
AGKPTKDTEK FICRADVYGS EPSDLAGKFA PVPRCEKGGR LFFTSCKRHK GSSTRKERTA  420
GDGTWVRQNS KGVKNKAGVK VGETQNFRFK KDGSYTDWLM EEHHCCRQQA VAGDEEPVIC  480
RMYVSPRAPP DSAARQESAA FVQQQPAPQV SDPPCDKKKR DDVAEEAPAA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A4e-226725953236CXE carboxylesterase
2o7v_A4e-226725953236CXE carboxylesterase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.10.0probable carboxylesterase 17
TrEMBLA0A0E0BF210.0A0A0E0BF21_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02060.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-10NAC domain containing protein 90